Defunct functions

fetchAnnotation

knownOrganisms

plotDispersionEstimates,DGEList-method

<ul><li>The<code>plotDispersionEstimates,DGEList-method</code>function is superseded by the<code><a href="/link/plotBCV?package=easyRNASeq&version=2.8.2&to=edgeR%3AplotBCV" rd-options="edgeR:plotBCV" data-mini-rdoc="edgeR:plotBCV::plotBCV">plotBCV</a></code>function
as the<pkg>edgeR</pkg>DGEList object structure changed</li></ul>

Calculates the coverage of high-throughput short-reads against
    a genome of reference and summarizes it per feature of interest (e.g. exon,
    gene, transcript). The data can be normalized as 'RPKM' or by the 'DESeq'
    or 'edgeR' package.

Nicolas Delhomme

easyRNASeq

Count summarization and normalization for RNA-Seq data

Defunct functions function

<ul><li>The<code>plotDispersionEstimates,DGEList-method</code>function is superseded by the<code><a href="plotBCV" rd-options="edgeR:plotBCV">plotBCV</a></code>function
as the<pkg>edgeR</pkg>DGEList object structure changed</li></ul>

The following function are defunct:
<ul><li><code>fetchAnnotation</code></li><li><code>knownOrganisms</code></li><li><code>plotDispersionEstimates,DGEList-method</code></li></ul>

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Defunct functions: The following function are defunct:
`fetchAnnotation`
`knownOrganisms`
`plotDispersionEstimates,DGEList-method`

Description

Arguments